CRAN/E | freesurferformats

freesurferformats

Read and Write 'FreeSurfer' Neuroimaging File Formats

Installation

About

Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.

github.com/dfsp-spirit/freesurferformats
Bug report File report

Key Metrics

Version 0.1.18
Published 2024-02-02 83 days ago
Needs compilation? no
License MIT
License File
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Maintainer

Maintainer

Tim Schäfer

ts+code@rcmd.org

Authors

Tim Schäfer

aut / cre

Material

Reference manual
Package source

In Views

MedicalImaging

Vignettes

Reading FreeSurfer neuroimaging data with freesurferformats
Computing volume header data with freesurferformats
Writing FreeSurfer neuroimaging data with freesurferformats

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

freesurferformats archive

Imports

utils
pkgfilecache ≥ 0.1.1
xml2

Suggests

knitr
rmarkdown
curl
testthat ≥ 2.1.0
oro.nifti ≥0.9
gifti ≥ 0.7.5
cifti ≥ 0.4.5

Reverse Imports

fsbrain
threeBrain
wal

Reverse Suggests

raveio
ravetools