CRAN/E | finalsize

finalsize

Calculate the Final Size of an Epidemic

Installation

About

Calculate the final size of a susceptible-infectious-recovered epidemic in a population with demographic variation in contact patterns and susceptibility to disease, as discussed in Miller (2012) doi:10.1007/s11538-012-9749-6.

github.com/epiverse-trace/finalsize
epiverse-trace.github.io/finalsize/
Bug report File report

Key Metrics

Version 0.2.0
R ≥ 2.10
Published 2023-05-09 325 days ago
Needs compilation? yes
License MIT
License File
CRAN checks finalsize results

Downloads

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Maintainer

Maintainer

Pratik Gupte

pratik.gupte@lshtm.ac.uk

Authors

Pratik Gupte

aut / cre / cph

Edwin Van Leeuwen

aut / cph

Adam Kucharski

aut / cph

Rosalind Eggo

ctb

Hugo Gruson

ctb

Thibaut Jombart

ctb

Andree Valle-Campos

ctb

Joshua W. Lambert

rev

Material

README
NEWS
Reference manual
Package source

Vignettes

Comparison with a compartmental model
Calculating the final size of an epidemic
Guide to constructing susceptibility matrices
Modelling uncertainty in R₀
Modelling heterogeneous social contacts
Modelling heterogeneous susceptibility

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

finalsize archive

Depends

R ≥ 2.10

Imports

checkmate
Rcpp

Suggests

colorspace
covr
dplyr
knitr
bookdown
scales
socialmixr
testthat ≥ 3.0.0
tibble
xml2
ggplot2
ggtext
rmarkdown
usethis
forcats
purrr
tidyr

LinkingTo

Rcpp
RcppEigen