CRAN/E | fastqcr

fastqcr

Quality Control of Sequencing Data

Installation

About

'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.

rpkgs.datanovia.com/fastqcr/index.html
Bug report File report

Key Metrics

Version 0.1.3
R ≥ 3.1.2
Published 2023-02-18 427 days ago
Needs compilation? no
License GPL-2
CRAN checks fastqcr results

Downloads

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Last 7 days 100 -48%
Last 30 days 638 -14%
Last 90 days 2.178 -2%
Last 365 days 9.080 -8%

Maintainer

Maintainer

Alboukadel Kassambara

alboukadel.kassambara@gmail.com

Authors

Alboukadel Kassambara

aut / cre

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

fastqcr archive

Depends

R ≥ 3.1.2

Imports

dplyr
grid
gridExtra
ggplot2
magrittr
readr ≥ 1.3.0
rmarkdown ≥ 1.4
rvest
tibble
tidyr
scales
stats
utils
xml2
rlang

Suggests

knitr

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