CRAN/E | effectR

effectR

Predicts Oomycete Effectors

Installation

About

Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) doi:10.1038/nature08358.

Key Metrics

Version 1.0.2
R ≥ 3.5.0
Published 2018-09-30 2041 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks effectR results

Downloads

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Maintainer

Maintainer

Javier Tabima

tabimaj@oregonstate.edu

Authors

Javier Tabima

aut / cre

Niklaus J. Grunwald

ths

Material

README
NEWS
Reference manual
Package source

Vignettes

effectR: An R package to call oomycete effectors

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

effectR archive

Depends

R ≥ 3.5.0

Imports

seqinr ≥ 3.3.6
ggplot2 ≥ 2.2.1
shiny
reshape2
utils
rmarkdown
viridis

Suggests

knitr
testthat