CRAN/E | dynwrap

dynwrap

Representing and Inferring Single-Cell Trajectories

Installation

About

Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) doi:10.1038/s41587-019-0071-9.

Citation dynwrap citation info
github.com/dynverse/dynwrap
Bug report File report

Key Metrics

Version 1.2.3
R ≥ 3.0.0
Published 2023-03-01 423 days ago
Needs compilation? no
License MIT
License File
CRAN checks dynwrap results

Downloads

Yesterday 31 0%
Last 7 days 125 -14%
Last 30 days 546 -20%
Last 90 days 1.768 -13%
Last 365 days 7.942 +10%

Maintainer

Maintainer

Robrecht Cannoodt

rcannood@gmail.com

Authors

Robrecht Cannoodt

aut / cre

(rcannood)

Wouter Saelens

aut

(zouter)

Material

README
NEWS
Reference manual
Package source

Vignettes

Creating a TI method: Container
Creating a TI method: Script
Creating a TI method: R
Creating a TI method: Wrapping trajectories

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

dynwrap archive

Depends

R ≥ 3.0.0

Imports

assertthat
babelwhale
crayon
dplyr
dynutils ≥ 1.0.3
dynparam
igraph
glue
magrittr
Matrix
methods
purrr
processx
readr
stringr
reshape2
tibble
tidyr
yaml

Suggests

covr
dyndimred
hdf5r
knitr
pkgload
ranger
rmarkdown
testthat

Reverse Imports

dynfeature
dynplot
SCORPIUS

Reverse Suggests

dyngen