CRAN/E | dyngen

dyngen

A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses

Installation

About

A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) doi:10.1038/s41467-021-24152-2.

Citation dyngen citation info
dyngen.dynverse.org
github.com/dynverse/dyngen
Bug report File report

Key Metrics

Version 1.0.4
R ≥ 3.5.0
Published 2022-08-27 608 days ago
Needs compilation? no
License MIT
License File
CRAN checks dyngen results

Downloads

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Maintainer

Maintainer

Robrecht Cannoodt

rcannood@gmail.com

Authors

Robrecht Cannoodt

aut / cre / cph

Wouter Saelens

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Getting started
Installation instructions

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

dyngen archive

Depends

R ≥ 3.5.0

Imports

assertthat
dplyr
dynutils ≥ 1.0.4
ggplot2
ggraph ≥2.0
ggrepel
GillespieSSA2 ≥ 0.2.6
grDevices
grid
igraph
lmds
Matrix
methods
patchwork
pbapply
purrr
rlang ≥ 0.4.1
stats
tibble
tidygraph
tidyr
utils
viridis

Suggests

anndata
covr
dynwrap ≥ 1.2.0
R.rsp
rmarkdown
Seurat
SingleCellExperiment ≥ 1.5.3
SummarizedExperiment
testthat