CRAN/E | detectRUNS

detectRUNS

Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes

Installation

About

Detection of runs of homozygosity and of heterozygosity in diploid genomes using two methods: sliding windows (Purcell et al (2007) doi:10.1086/519795) and consecutive runs (Marras et al (2015) doi:10.1111/age.12259).

github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS
Bug report File report

Key Metrics

Version 0.9.6
R ≥ 3.0.0
Published 2019-10-24 1640 days ago
Needs compilation? yes
License GPL-3
CRAN checks detectRUNS results

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Maintainer

Maintainer

Filippo Biscarini

filippo.biscarini@gmail.com

Authors

Filippo Biscarini

aut / cre

Paolo Cozzi

aut

Giustino Gaspa

aut

Gabriele Marras

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

detectRUNS: an R package to detect runs of homozygosity and heterozygosity in diploid genomes

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

detectRUNS archive

Depends

R ≥ 3.0.0

Imports

plyr
iterators
itertools
ggplot2
reshape2
Rcpp
gridExtra
data.table

Suggests

testthat
knitr
rmarkdown
prettydoc

LinkingTo

Rcpp