dartR.popgen
Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
Facilitates the analysis of SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. 'dartR.popgen' provides a suit of functions to analyse such data in a population genetics context. It provides several functions to calculate population genetic metrics and to study population structure. Quite a few functions need additional software to be able to run (gl.run.structure(), gl.blast(), gl.LDNe()). You find detailed description in the help pages how to download and link the packages so the function can run the software. 'dartR.popgen' is part of the the 'dartRverse' suit of packages. Gruber et al. (2018) doi:10.1111/1755-0998.12745. Mijangos et al. (2022) doi:10.1111/2041-210X.13918.
- Version1.0.0
- R version≥ 3.5
- LicenseGPL (≥ 3)
- Needs compilation?No
- Last release06/27/2024
Documentation
Team
Bernd Gruber
MaintainerShow author detailsEric Archer
Show author detailsRolesContributorJose L. Mijangos
Show author detailsRolesAuthorLindsay V. Clark
Carlo Pacioni
Show author detailsRolesAuthorArthur Georges
Show author detailsRolesAuthorPeter J. Unmack
Show author detailsRolesContributorOliver Berry
Show author detailsRolesContributorFloriaan Devloo-Delva
Show author detailsRolesContributor
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Dependencies
- Depends3 packages
- Imports10 packages
- Suggests20 packages
- Reverse Suggests1 package