CRAN/E | corrcoverage

corrcoverage

Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping

Installation

About

Using a computationally efficient method, the package can be used to find the corrected coverage estimate of a credible set of putative causal variants from Bayesian genetic fine-mapping. The package can also be used to obtain a corrected credible set if required; that is, the smallest set of variants required such that the corrected coverage estimate of the resultant credible set is within some user defined accuracy of the desired coverage. Maller et al. (2012) doi:10.1038/ng.2435, Wakefield (2009) doi:10.1002/gepi.20359, Fortune and Wallace (2018) doi:10.1093/bioinformatics/bty898.

annahutch.github.io/corrcoverage
System requirements C++11
Bug report File report

Key Metrics

Version 1.2.1
R ≥ 3.5.0
Published 2019-12-06 1608 days ago
Needs compilation? yes
License MIT
License File
CRAN checks corrcoverage results
OS unix

Downloads

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Maintainer

Maintainer

Anna Hutchinson

anna.hutchinson@mrc-bsu.cam.ac.uk

Authors

Anna Hutchinson

aut / cre

Chris Wallace

aut

Kevin Kunzmann

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

Corrected Credible Set
Useful Info
From GWAS Summary Statistics to Credible Sets
Correcting the Coverage of Credible Sets

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Old Sources

corrcoverage archive

Depends

R ≥ 3.5.0

Imports

data.table
magrittr
stats
matrixStats
Rcpp

Suggests

covr
dplyr
knitr
mvtnorm
rmarkdown
testthat
pkgdown

LinkingTo

Rcpp
RcppArmadillo