CRAN/E | copyseparator

copyseparator

Assembling Long Gene Copies from Short Read Data

Installation

About

Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.

github.com/LeiYang-Fish/copyseparator
Bug report File report

Key Metrics

Version 1.2.0
R ≥ 3.5.0
Published 2022-11-25 490 days ago
Needs compilation? no
License GPL-2
CRAN checks copyseparator results

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Maintainer

Maintainer

Lei Yang

leiyangslu@gmail.com

Authors

Lei Yang

Material

NEWS
Reference manual
Package source

Vignettes

Usage_of_copyseparator

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

copyseparator archive

Depends

R ≥ 3.5.0

Imports

ape
seqinr
stringr
kmer
DECIPHER
beepr
Biostrings
grDevices
doParallel
foreach
parallel

Suggests

knitr
rmarkdown
testthat ≥ 3.0.0