CRAN/E | copulaSim

copulaSim

Virtual Patient Simulation by Copula Invariance Property

Installation

About

To optimize clinical trial designs and data analysis methods consistently through trial simulation, we need to simulate multivariate mixed-type virtual patient data independent of designs and analysis methods under evaluation. To make the outcome of optimization more realistic, relevant empirical patient level data should be utilized when it’s available. However, a few problems arise in simulating trials based on small empirical data, where the underlying marginal distributions and their dependence structure cannot be understood or verified thoroughly due to the limited sample size. To resolve this issue, we use the copula invariance property, which can generate the joint distribution without making a strong parametric assumption. The function copula.sim can generate virtual patient data with optional data validation methods that are based on energy distance and ball divergence measurement. The function compare.copula.sim can conduct comparison of marginal mean and covariance of simulated data. To simulate patient-level data from a hypothetical treatment arm that would perform differently from the observed data, the function new.arm.copula.sim can be used to generate new multivariate data with the same dependence structure of the original data but with a shifted mean vector.

github.com/psyen0824/copulaSim

Key Metrics

Version 0.0.1
R ≥ 4.0.0
Published 2022-08-19 623 days ago
Needs compilation? no
License MIT
License File
CRAN checks copulaSim results

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Maintainer

Maintainer

Pei-Shan Yen

peishan0824@gmail.com

Authors

Pei-Shan Yen

aut / cre

Xuemin Gu

ctb

Jenny Jiao

ctb

Jane Zhang

ctb

Material

Reference manual
Package source

Vignettes

Introduction to copulaSim

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 4.0.0

Imports

dplyr ≥ 1.0.0
magrittr ≥ 1.5
mvtnorm ≥ 1.0-12
rlang
stats
tibble
utils

Suggests

rmarkdown
knitr
ggplot2
testthat ≥ 3.1.1
Ball ≥1.3.0
energy ≥ 1.7-0