CRAN/E | combiroc

combiroc

Selection and Ranking of Omics Biomarkers Combinations Made Easy

Installation

About

Provides functions and a workflow to easily and powerfully calculating specificity, sensitivity and ROC curves of biomarkers combinations. Allows to rank and select multi-markers signatures as well as to find the best performing sub-signatures, now also from single-cell RNA-seq datasets. The method used was first published as a Shiny app and described in Mazzara et al. (2017) doi:10.1038/srep45477 and further described in Bombaci & Rossi (2019) doi:10.1007/978-1-4939-9164-8_16, and widely expanded as a package as presented in the bioRxiv pre print Ferrari et al. doi:10.1101/2022.01.17.476603.

doi.org/10.1101/2022.01.17.476603
github.com/ingmbioinfo/combiroc
Bug report File report

Key Metrics

Version 0.3.4
R ≥ 3.5.0
Published 2023-07-06 266 days ago
Needs compilation? no
License MIT
License File
CRAN checks combiroc results
Language en-US

Downloads

Yesterday 6 0%
Last 7 days 48 -31%
Last 30 days 261 -5%
Last 90 days 969 +25%
Last 365 days 3.473 +17%

Maintainer

Maintainer

Riccardo L. Rossi

ric.rossi@gmail.com

Authors

Ivan Ferrari

aut

Riccardo L. Rossi

aut / cre

Saveria Mazzara

aut

Mauro Bombaci

ccp / ctb / dtc

Material

README
NEWS
Reference manual
Package source

Vignettes

Quick guide to CombiROC
Single cell Combiroc tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

combiroc archive

Depends

R ≥ 3.5.0

Imports

tidyr
dplyr
ggplot2
gtools
pROC
stringr
stats
utils
moments

Suggests

testthat ≥ 3.0.0
knitr
markdown
rmarkdown
httr
Seurat