CRAN/E | coloc

coloc

Colocalisation Tests of Two Genetic Traits

Installation

About

Performs the colocalisation tests described in Giambartolomei et al (2013) doi:10.1371/journal.pgen.1004383, Wallace (2020) doi:10.1371/journal.pgen.1008720, Wallace (2021) doi:10.1371/journal.pgen.1009440.

Citation coloc citation info
github.com/chr1swallace/coloc
Bug report File report

Key Metrics

Version 5.2.3
R ≥ 3.5
Published 2023-10-03 205 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks coloc results

Downloads

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Maintainer

Maintainer

Chris Wallace

cew54@cam.ac.uk

Authors

Chris Wallace

aut / cre

Claudia Giambartolomei

aut

Vincent Plagnol

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

Coloc: a package for colocalisation analyses
Coloc: data structures
Coloc: under a single causal variant assumption
Coloc: sensitivity to prior values
DEPRECATED Coloc: relaxing the single causal variant assumption
Coloc: using SuSiE to relax the single causal variant assumption

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

coloc archive

Depends

R ≥ 3.5

Imports

data.table
ggplot2
methods
viridis
stats
grDevices
susieR ≥ 0.12.06
utils

Suggests

knitr
testthat
mvtnorm
magrittr
rmarkdown

Reverse Imports

RapidoPGS

Reverse Suggests

xQTLbiolinks