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codacore

Learning Sparse Log-Ratios for Compositional Data

Installation

About

In the context of high-throughput genetic data, CoDaCoRe identifies a set of sparse biomarkers that are predictive of a response variable of interest (Gordon-Rodriguez et al., 2021) doi:10.1093/bioinformatics/btab645. More generally, CoDaCoRe can be applied to any regression problem where the independent variable is Compositional (CoDa), to derive a set of scale-invariant log-ratios (ILR or SLR) that are maximally associated to a dependent variable.

Citation codacore citation info
System requirements TensorFlow (https://www.tensorflow.org/)

Key Metrics

Version 0.0.4
R ≥ 3.6.0
Published 2022-08-29 605 days ago
Needs compilation? no
License MIT
License File
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Maintainer

Maintainer

Elliott Gordon-Rodriguez

eg2912@columbia.edu

Authors

Elliott Gordon-Rodriguez

aut / cre

Thomas Quinn

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

my-vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

codacore archive

Depends

R ≥ 3.6.0

Imports

tensorflow ≥ 2.1
keras ≥ 2.3
pROC ≥ 1.17
R6 ≥2.5
gtools ≥ 3.8

Suggests

zCompositions
testthat ≥ 2.1.0
knitr
rmarkdown