CRAN/E | coda4microbiome

coda4microbiome

Compositional Data Analysis for Microbiome Studies

Installation

About

Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

malucalle.github.io/coda4microbiome/
Bug report File report

Key Metrics

Version 0.2.3
R ≥ 3.5.0
Published 2024-02-21 58 days ago
Needs compilation? no
License MIT
License File
CRAN checks coda4microbiome results

Downloads

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Maintainer

Maintainer

Toni Susin

toni.susin@upc.edu

Authors

Malu Calle

aut

Toni Susin

aut / cre

Meritxell Pujolassos

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

coda4microbiome archive

Depends

R ≥ 3.5.0

Imports

corrplot
glmnet
plyr
pROC
ggpubr
ggplot2
ComplexHeatmap
circlize
survival
survminer

Suggests

rmarkdown