What does the R-package 'cfr' do?

Estimate Disease Severity and Case Ascertainment

Pratik R. Gupte, Adam Kucharski, Tim Russell, Joshua W. Lambert, Hugo Gruson, Tim Taylor, James M. Azam, Abdoelnaser M. Degoot, Sebastian Funk

CRAN/E | cfr

Estimate the severity of a disease and ascertainment of cases, as discussed in Nishiura et al. (2009) doi:10.1371/journal.pone.0006852.

github.com/epiverse-trace/cfr
epiverse-trace.github.io/cfr/
Bug report	File report

Pratik R. Gupte

pratik.gupte@lshtm.ac.uk

Estimating disease severity while correcting for reporting delays
Handling data from {incidence2}
A primer on working with delay distributions
Estimating the proportion of cases that are ascertained during an outbreak
Calculating a static, delay-adjusted estimate of disease severity
Estimating how disease severity varies over the course of an outbreak

R

≥ 3.5.0

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