CRAN/E | cauphy

cauphy

Trait Evolution on Phylogenies Using the Cauchy Process

Installation

About

The Cauchy Process can model pulsed continuous trait evolution on phylogenies. The likelihood is tractable, and is used for parameter inference and ancestral trait reconstruction. See Bastide and Didier (2023) doi:10.1093/sysbio/syad053.

Citation cauphy citation info
gilles-didier.github.io/cauphy/
Bug report File report

Key Metrics

Version 1.0.2
R ≥ 3.5
Published 2023-11-29 154 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks cauphy results
Language en-US

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Maintainer

Maintainer

Paul Bastide

paul.bastide@cnrs.fr

Authors

Gilles Didier

aut / cph

Paul Bastide

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Example Analysis

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

cauphy archive

Depends

R ≥ 3.5
ape ≥ 5.5

Imports

methods
robustbase
phylolm
nloptr
pracma
foreach
doParallel
HDInterval

Suggests

covr
knitr
rmarkdown
spelling
geiger
testthat ≥ 3.0.0