CRAN/E | calibmsm

calibmsm

Calibration Plots for the Transition Probabilities from Multistate Models

Installation

About

Assess the calibration of an existing (i.e. previously developed) multistate model through calibration plots. Calibration is assessed using one of three methods. 1) Calibration methods for binary logistic regression models applied at a fixed time point in conjunction with inverse probability of censoring weights. 2) Calibration methods for multinomial logistic regression models applied at a fixed time point in conjunction with inverse probability of censoring weights. 3) Pseudo-values estimated using the Aalen-Johansen estimator of observed risk. All methods are applied in conjunction with landmarking when required. These calibration plots evaluate the calibration (in a validation cohort of interest) of the transition probabilities estimated from an existing multistate model. While package development has focused on multistate models, calibration plots can be produced for any model which utilises information post baseline to update predictions (e.g. dynamic models); competing risks models; or standard single outcome survival models, where predictions can be made at any landmark time. The underpinning methodology is currently undergoing peer review; see Pate et al. (2023) and Pate et al. (2023) .

alexpate30.github.io/calibmsm/

Key Metrics

Version 1.0.0
R ≥ 2.10
Published 2023-11-30 152 days ago
Needs compilation? no
License MIT
License File
CRAN checks calibmsm results

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Maintainer

Maintainer

Alexander Pate

alexander.pate@manchester.ac.uk

Authors

Alexander Pate

aut / cre / cph

Glen P Martin

fnd / rev

Material

README
NEWS
Reference manual
Package source

Vignettes

Directory-of-vignettes

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 2.10

Imports

boot
dplyr
ggplot2
ggpubr
Hmisc
magrittr
mstate
rms
stats
survival
tidyr
VGAM

Suggests

covr
knitr
rmarkdown
testthat ≥ 3.0.0