CRAN/E | VGAM

VGAM

Vector Generalized Linear and Additive Models

Installation

About

An implementation of about 6 major classes of statistical regression models. The central algorithm is Fisher scoring and iterative reweighted least squares. At the heart of this package are the vector generalized linear and additive model (VGLM/VGAM) classes. VGLMs can be loosely thought of as multivariate GLMs. VGAMs are data-driven VGLMs that use smoothing. The book "Vector Generalized Linear and Additive Models: With an Implementation in R" (Yee, 2015) doi:10.1007/978-1-4939-2818-7 gives details of the statistical framework and the package. Currently only fixed-effects models are implemented. Many (100+) models and distributions are estimated by maximum likelihood estimation (MLE) or penalized MLE. The other classes are RR-VGLMs (reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs, RCIMs (row-column interaction models)—these classes perform constrained and unconstrained quadratic ordination (CQO/UQO) models in ecology, as well as constrained additive ordination (CAO). Hauck-Donner effect detection is implemented. Note that these functions are subject to change; see the NEWS and ChangeLog files for latest changes.

Citation VGAM citation info
www.stat.auckland.ac.nz/~yee/VGAM/

Key Metrics

Version 1.1-8
R ≥ 4.0.0
Published 2023-03-09 86 days ago
Needs compilation? yes
License GPL-3
CRAN checks VGAM results

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Maintainer

Maintainer

Thomas Yee

t.yee@auckland.ac.nz

Authors

Thomas Yee

aut / cre

Cleve Moler

ctb

(author of several LINPACK routines)

Material

NEWS
ChangeLog
Reference manual
Package source

In Views

Distributions
Econometrics
Environmetrics
ExtremeValue
Psychometrics
Survival

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

VGAM archive

Depends

R ≥ 4.0.0
methods
stats
stats4
splines

Suggests

VGAMextra
MASS
mgcv

Enhances

VGAMdata

Reverse Depends

AnaCoDa
BayesGOF
deepSNV
DIFtree
EffectStars
errint
EurosarcBayes
fitPS
monocle
ordDisp
r3Cseq
regclass
rxSeq
svyVGAM
TBFmultinomial
VGAMdata
VGAMextra

Reverse Imports

AICcmodavg
binspp
BioPET
CAGEr
Cascade
casebase
casper
cg
childsds
cicero
ClusPred
collin
CompDist
corncob
Countr
crlmm
crov
DEsingle
difNLR
discSurv
DPBBM
Dpit
drord
dwp
EffectStars2
eoa3
ExomeDepth
fiberLD
FRASER
GeoModels
GJRM
glmxdiag
GlobalAncova
gofcat
ib
iccCounts
jmdem
JWileymisc
l1ball
lefko3
list
MADSEQ
marp
misreport
multgee
netmediate
PAFit
PAsso
Patterns
ph2bye
Load all 84 items
(warning: might lead to performance issues and take some time)

Reverse Suggests

adaptDiag
broom.helpers
cardelino
catdata
copula
cubfits
DescTools
ecostats
ExtDist
extraDistr
familiar
ggeffects
grandR
Hmisc
hnp
insight
isdals
kyotil
medflex
mediation
mlt.docreg
modeest
netUtils
occupancy
ordinalNet
parameters
partDSA
performance
plot3logit
ppcc
qra
rms
robustrank
sageR
serp
Seurat
ShinyItemAnalysis
skellam
Sofi
stat.extend
sure
utilities
vcdExtra
wrMisc

Reverse Enhances

prediction
texreg