CRAN/E | caRpools

caRpools

CRISPR AnalyzeR for Pooled CRISPR Screens

Installation

About

CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (http://sourceforge.net/p/mageck/wiki/Home/), bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See for more information on CRISPR.

www.crispr-analyzer.de
github.com/boutroslab/caRpools
System requirements MAGeCK (=0.51, from http://sourceforge.net/p/mageck/wiki/Home/), bowtie2 (http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)
Bug report File report

Key Metrics

Version 0.83
R ≥ 3.1.0
Published 2015-12-06 3064 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks caRpools results

Downloads

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Maintainer

Maintainer

Jan Winter

jan.winter@dkfz-heidelberg.de

Authors

Jan Winter
Florian Heigwer

Material

Reference manual
Package source

Vignettes

The caRpools package - Analysis of pooled CRISPR Screens

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

caRpools archive

Depends

R ≥ 3.1.0

Imports

rmarkdown
VennDiagram
DESeq2
sm
biomaRt
seqinr
scatterplot3d
xlsx

Suggests

BiocGenerics
knitr
stringi