CRAN/E | breakaway

breakaway

Species Richness Estimation and Modeling

Installation

About

Understanding the drivers of microbial diversity is an important frontier of microbial ecology, and investigating the diversity of samples from microbial ecosystems is a common step in any microbiome analysis. 'breakaway' is the premier package for statistical analysis of microbial diversity. 'breakaway' implements the latest and greatest estimates of species richness, as well as the most commonly used estimates. Methods uniquely available in this package include objective Bayes estimators described in Barger and Bunge (2010) doi:10.1214/10-BA527, frequency-ratio-based estimators described in Willis and Bunge (2015) doi:10.1111/biom.12332, and as described in Willis, Whitman, and Bunge (2016) doi:10.1111/rssc.12206, a linear modeling approach for detecting changes in diversity.

adw96.github.io/breakaway/
Bug report File report

Key Metrics

Version 4.7.9
R ≥ 3.5.0
Published 2022-03-09 751 days ago
Needs compilation? no
License GPL-2
CRAN checks breakaway results

Downloads

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Maintainer

Maintainer

Amy Willis

adwillis@uw.edu

Authors

Amy Willis

aut / cre

Bryan D Martin

aut

Pauline Trinh

aut

Sarah Teichman

aut

David Clausen

aut

Kathryn Barger

aut

John Bunge

aut

Material

README
Reference manual
Package source

Vignettes

getting-started
intro-hypothesis-testing
intro-diversity-estimation

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

breakaway archive

Depends

R ≥ 3.5.0

Imports

ggplot2
graphics
lme4
magrittr
MASS
phyloseq
stats
tibble
utils

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