Installation
About
The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. This simulation approach is now extended to subpopulations related by a tree. Method described in Ochoa and Storey (2021) doi:10.1371/journal.pgen.1009241.
Citation | bnpsd citation info |
github.com/StoreyLab/bnpsd/ | |
Bug report | File report |
Key Metrics
Downloads
Yesterday | 9 0% |
Last 7 days | 56 -15% |
Last 30 days | 307 +3% |
Last 90 days | 1.085 +26% |
Last 365 days | 3.858 -13% |