CRAN/E | bnpsd

bnpsd

Simulate Genotypes from the BN-PSD Admixture Model

Installation

About

The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. This simulation approach is now extended to subpopulations related by a tree. Method described in Ochoa and Storey (2021) doi:10.1371/journal.pgen.1009241.

Citation bnpsd citation info
github.com/StoreyLab/bnpsd/
Bug report File report

Key Metrics

Version 1.3.13
Published 2021-08-25 946 days ago
Needs compilation? no
License GPL (≥ 3)
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Maintainer

Maintainer

Alejandro Ochoa

alejandro.ochoa@duke.edu

Authors

Alejandro Ochoa

aut / cre

John D. Storey

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Simulate Admixed Populations with 'bnpsd'

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bnpsd archive

Imports

stats
ape
nnls

Suggests

popkin ≥ 1.3.9
testthat
knitr
rmarkdown
RColorBrewer

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