CRAN/E | biospear

biospear

Biomarker Selection in Penalized Regression Models

Installation

About

Provides some tools for developing and validating prediction models, estimate expected survival of patients and visualize them graphically. Most of the implemented methods are based on penalized regressions such as: the lasso (Tibshirani R (1996)), the elastic net (Zou H et al. (2005) doi:10.1111/j.1467-9868.2005.00503.x), the adaptive lasso (Zou H (2006) doi:10.1198/016214506000000735), the stability selection (Meinshausen N et al. (2010) doi:10.1111/j.1467-9868.2010.00740.x), some extensions of the lasso (Ternes et al. (2016) doi:10.1002/sim.6927), some methods for the interaction setting (Ternes N et al. (2016) doi:10.1002/bimj.201500234), or others. A function generating simulated survival data set is also provided.

Key Metrics

Version 1.0.2
R ≥ 2.10
Published 2018-12-04 1942 days ago
Needs compilation? no
License GPL-2
CRAN checks biospear results

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Maintainer

Maintainer

Stefan Michiels

stefan.michiels@gustaveroussy.fr

Authors

Nils Ternes

aut

Federico Rotolo

aut

Stefan Michiels

aut / cre

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

biospear archive

Depends

R ≥ 2.10
pkgconfig

Imports

cobs
corpcor
devtools
glmnet
graphics
grplasso
MASS
Matrix
mboost
parallel
plsRcox
pROC
PRROC
RCurl
stats
survAUC
survival