CRAN/E | biogrowth

biogrowth

Modelling of Population Growth

Installation

About

Modelling of population growth under static and dynamic environmental conditions. Includes functions for model fitting and making prediction under isothermal and dynamic conditions. The methods (algorithms & models) are based on predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).

Citation biogrowth citation info

Key Metrics

Version 1.0.3
R ≥ 2.10
Published 2023-08-19 252 days ago
Needs compilation? no
License GPL-3
CRAN checks biogrowth results

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Maintainer

Maintainer

Alberto Garre

garre.alberto@gmail.com

Authors

Alberto Garre

aut / cre

Jeroen Koomen

aut

Heidy den Besten

aut

Marcel Zwietering

aut

Material

NEWS
Reference manual
Package source

Vignettes

Growth predictions in biogrowth
Fitting growth models in biogrowth
Including uncertainty in growth predictions in biogrowth
Comparing growth models
v05_custom_stochastic
Modelling approach
Description of datasets
About the units of the growth rate (mu)
Advanced plotting options in biogrowth
Modelling constant environmental conditions using secondary models
Deprecated and superseded functions

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

biogrowth archive

Depends

R ≥ 2.10

Imports

deSolve ≥ 1.28
tibble ≥ 3.0.3
dplyr ≥ 0.8.5
FME ≥ 1.3.6
MASS ≥ 7.3
rlang ≥ 0.4.7
purrr ≥ 0.3.4
ggplot2 ≥ 3.3.2
cowplot ≥ 1.0.0
lamW ≥ 1.3.0
tidyr ≥ 1.0.2
formula.tools ≥ 1.7.1
lifecycle

Suggests

knitr
rmarkdown
tidyverse ≥ 1.3.0