CRAN/E | biogram

biogram

N-Gram Analysis of Biological Sequences

Installation

About

Tools for extraction and analysis of various n-grams (k-mers) derived from biological sequences (proteins or nucleic acids). Contains QuiPT (quick permutation test) for fast feature-filtering of the n-gram data.

Citation biogram citation info
github.com/michbur/biogram
Bug report File report

Key Metrics

Version 1.6.3
R ≥ 3.0.0
Published 2020-03-31 1490 days ago
Needs compilation? no
License GPL-3
CRAN checks biogram results

Downloads

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Last 7 days 82 -10%
Last 30 days 291 -2%
Last 90 days 845 -24%
Last 365 days 3.571 -22%

Maintainer

Maintainer

Michal Burdukiewicz

michalburdukiewicz@gmail.com

Authors

Michal Burdukiewicz

cre / aut

Piotr Sobczyk

aut

Chris Lauber

aut

Dominik Rafacz

aut

Katarzyna Sidorczuk

ctb

Material

README
ChangeLog
Reference manual
Package source

Vignettes

biogram package - an overview

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

biogram archive

Depends

R ≥ 3.0.0
slam

Imports

combinat
entropy
partitions

Suggests

ggplot2
knitr
testthat

Reverse Imports

AmpGram
AmyloGram
CancerGram