CRAN/E | bigsnpr

bigsnpr

Analysis of Massive SNP Arrays

Installation

About

Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) doi:10.1093/bioinformatics/bty185.

Citation bigsnpr citation info
privefl.github.io/bigsnpr/
System requirements C++11. Also a few functions from package 'bigsnpr' wrap existing software such as 'PLINK' <www.cog-genomics.org/plink2>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris).
Bug report File report

Key Metrics

Version 1.12.2
R ≥ 3.4
Published 2023-03-28 367 days ago
Needs compilation? yes
License GPL-3
CRAN checks bigsnpr results
Language en-US

Downloads

Yesterday 57 0%
Last 7 days 172 -71%
Last 30 days 1.271 -67%
Last 90 days 7.061 +3%
Last 365 days 21.139 +73%

Maintainer

Maintainer

Florian Privé

florian.prive.21@gmail.com

Authors

Florian Privé

aut / cre

Michael Blum

ths

Hugues Aschard

ths

Bjarni Jóhann Vilhjálmsson

ths

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bigsnpr archive

Depends

R ≥ 3.4
bigstatsr ≥ 1.5.11

Imports

bigassertr ≥ 0.1.6
bigparallelr
bigsparser ≥ 0.6
bigreadr
bigutilsr ≥ 0.3.3
data.table ≥ 1.12.4
doRNG
foreach
ggplot2
magrittr
Matrix ≥ 1.3.0
methods
Rcpp
runonce ≥ 0.2.3
stats
vctrs

Suggests

bindata
covr
dbplyr ≥ 1.4
dplyr
gaston
glue
Hmisc
microbenchmark
pcadapt ≥ 4.1
quadprog
RhpcBLASctl
rmutil
RSpectra
RSQLite
R.utils
spelling
testthat
tibble
xgboost

LinkingTo

bigsparser
bigstatsr
Rcpp
RcppArmadillo ≥ 0.9.600
rmio
roptim ≥ 0.1.6

Reverse Imports

locStra
PRSPGx
RapidoPGS