CRAN/E | bhmbasket

bhmbasket

Bayesian Hierarchical Models for Basket Trials

Installation

About

Provides functions for the evaluation of basket trial designs with binary endpoints. Operating characteristics of a basket trial design are assessed by simulating trial data according to scenarios, analyzing the data with Bayesian hierarchical models (BHMs), and assessing decision probabilities on stratum and trial-level based on Go / No-go decision making. The package is build for high flexibility regarding decision rules, number of interim analyses, number of strata, and recruitment. The BHMs proposed by Berry et al. (2013) doi:10.1177/1740774513497539 and Neuenschwander et al. (2016) doi:10.1002/pst.1730, as well as a model that combines both approaches are implemented. Functions are provided to implement Bayesian decision rules as for example proposed by Fisch et al. (2015) doi:10.1177/2168479014533970. In addition, posterior point estimates (mean/median) and credible intervals for response rates and some model parameters can be calculated. For simulated trial data, bias and mean squared errors of posterior point estimates for response rates can be provided.

Citation bhmbasket citation info
CRAN.R-project.org/package=bhmbasket
System requirements JAGS 4.x.y (http://mcmc-jags.sourceforge.net)

Key Metrics

Version 0.9.5
R ≥ 3.5.0
Published 2022-02-14 794 days ago
Needs compilation? no
License GPL-3
CRAN checks bhmbasket results

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Maintainer

Maintainer

Stephan Wojciekowski

stephan.wojciekowski@boehringer-ingelheim.com

Authors

Stephan Wojciekowski

aut / cre

Material

NEWS
Reference manual
Package source

Vignettes

Running bhmbasket on HPC
Reproducing Parts of Neuenschwander et al. (2016)

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bhmbasket archive

Depends

R ≥ 3.5.0

Imports

foreach
doRNG
R2jags ≥ 0.7-1

Suggests

doFuture
future
knitr
rmarkdown