CRAN/E | bestNormalize

bestNormalize

Normalizing Transformation Functions

Installation

About

Estimate a suite of normalizing transformations, including a new adaptation of a technique based on ranks which can guarantee normally distributed transformed data if there are no ties: ordered quantile normalization (ORQ). ORQ normalization combines a rank-mapping approach with a shifted logit approximation that allows the transformation to work on data outside the original domain. It is also able to handle new data within the original domain via linear interpolation. The package is built to estimate the best normalizing transformation for a vector consistently and accurately. It implements the Box-Cox transformation, the Yeo-Johnson transformation, three types of Lambert WxF transformations, and the ordered quantile normalization transformation. It estimates the normalization efficacy of other commonly used transformations, and it allows users to specify custom transformations or normalization statistics. Finally, functionality can be integrated into a machine learning workflow via recipes.

Citation bestNormalize citation info
petersonr.github.io/bestNormalize/
github.com/petersonR/bestNormalize

Key Metrics

Version 1.9.1
R ≥ 3.1.0
Published 2023-08-18 242 days ago
Needs compilation? no
License GPL-3
CRAN checks bestNormalize results

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Maintainer

Maintainer

Ryan Andrew Peterson

ryan.a.peterson@cuanschutz.edu

Authors

Ryan Andrew Peterson

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

bestNormalize
Customization within bestNormalize

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bestNormalize archive

Depends

R ≥ 3.1.0

Imports

LambertW ≥ 0.6.5
nortest
dplyr
doParallel
foreach
doRNG
recipes
tibble
methods
butcher
purrr
generics

Suggests

knitr
rmarkdown
MASS
testthat
mgcv
parallel
ggplot2
scales
rlang
covr

Reverse Imports

IntOMICS
LongDat
tLOH

Reverse Suggests

mlr3pipelines