CRAN/E | bedr

bedr

Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Installation

About

Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.

System requirements Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix (>= 1.3)'.

Key Metrics

Version 1.0.7
R ≥ 3.0
Published 2019-04-01 1846 days ago
Needs compilation? no
License GPL-2
CRAN checks bedr results

Downloads

Yesterday 30 0%
Last 7 days 141 -7%
Last 30 days 677 -10%
Last 90 days 2.325 +1%
Last 365 days 9.013 +3%

Maintainer

Maintainer

Paul C. Boutros

pboutros@mednet.ucla.edu

Authors

Syed Haider

aut

Daryl Waggott

aut

Emilie Lalonde

ctb

Clement Fung

ctb

Paul C. Boutros

aut / cre / cph

Material

NEWS
Reference manual
Package source

Vignettes

bedr

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bedr archive

Depends

R ≥ 3.0

Imports

testthat ≥ 0.7.1
VennDiagram ≥ 1.6.4
data.table ≥1.8.11
R.utils ≥ 2.0.2
yaml ≥ 2.1.10
parallel
grid

Suggests

knitr ≥ 1.4
rmarkdown ≥ 0.9.5

Reverse Imports

chicane
Ravages