CRAN/E | bdc

bdc

Biodiversity Data Cleaning

Installation

About

It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) Pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) Taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) Space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) Time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality – which is essential for making data quality assessment transparent and reproducible. The reference for the methodology is Bruno et al. (2022) doi:10.1111/2041-210X.13868.

brunobrr.github.io/bdc/ (website) https://github.com/brunobrr/bdc
brunobrr.github.io/bdc/ (website) https://github.com/brunobrr/bdc
Bug report File report

Key Metrics

Version 1.1.4
Published 2023-03-13 403 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks bdc results
Language en-gb

Downloads

Yesterday 25 0%
Last 7 days 58 -25%
Last 30 days 359 -6%
Last 90 days 1.313 +27%
Last 365 days 4.827 -3%

Maintainer

Maintainer

Bruno Ribeiro

ribeiro.brr@gmail.com

Authors

Bruno Ribeiro

aut / cre

Santiago Velazco

aut

Karlo Guidoni-Martins

aut

Geiziane Tessarolo

aut

Lucas Jardim

aut

Steven Bachman

ctb

Rafael Loyola

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

Standardization and integration of different datasets
Pre-filter
Space
Taxonomy
Time

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bdc archive

Imports

CoordinateCleaner
dplyr
DT
foreach
fs
ggplot2
here
magrittr
purrr
qs
readr
rgnparser
rnaturalearth
sf ≥1.0.5
stringdist
stringi
stringr
taxadb ≥ 0.1.3
tibble
tidyselect

Suggests

contentid ≥ 0.0.15
covr
cowplot
DBI
doParallel
duckdb ≥ 0.3.2
knitr ≥ 1.31
maps
markdown
rappdirs
raster
remotes
rlang ≥ 1.0.1
rmarkdown
rnaturalearthdata
rvest
sp
testthat ≥ 3.0.0
xml2