CRAN/E | bbmix

bbmix

Bayesian Model for Genotyping using RNA-Seq

Installation

About

The method models RNA-seq reads using a mixture of 3 beta-binomial distributions to generate posterior probabilities for genotyping bi-allelic single nucleotide polymorphisms. Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J. Lewis and Chris Wallace (2023) doi:10.1093/bioinformatics/btad393 "BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing."

System requirements GNU make

Key Metrics

Version 1.0.0
R ≥ 3.4.0
Published 2023-07-06 302 days ago
Needs compilation? yes
License GPL-2
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Maintainer

Maintainer

Elena Vigorito

elena.vigorito@mrc-bsu.cam.ac.uk

Authors

Elena Vigorito

aut / cre

Chris Wallace

aut

Material

README
Reference manual
Package source

Vignettes

BBmix installation and usage

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 3.4.0

Imports

methods
Rcpp ≥ 0.12.0
rstan ≥ 2.18.1
R.utils
data.table
rmutil

Suggests

knitr
rmarkdown

LinkingTo

BH ≥ 1.66.0
Rcpp ≥ 0.12.0
RcppEigen ≥ 0.3.3.3.0
rstan ≥ 2.18.1
StanHeaders ≥ 2.18.0