CRAN/E | bbknnR

bbknnR

Perform Batch Balanced KNN in R

Installation

About

A fast and intuitive batch effect removal tool for single-cell data. BBKNN is originally used in the 'scanpy' python package, and now can be used with 'Seurat' seamlessly.

github.com/ycli1995/bbknnR
github.com/Teichlab/bbknn
bbknn.readthedocs.io/en/latest/
Bug report File report

Key Metrics

Version 1.1.1
R ≥ 4.1.0
Published 2024-02-13 73 days ago
Needs compilation? yes
License MIT
License File
CRAN checks bbknnR results

Downloads

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Maintainer

Maintainer

Yuchen Li

ycli1995@outlook.com

Authors

Yuchen Li

aut / cre

Material

README
Reference manual
Package source

Vignettes

bbknnR-tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

bbknnR archive

Depends

R ≥ 4.1.0
methods
utils

Imports

future
glmnet
Matrix
magrittr
Rcpp
RcppAnnoy
reticulate
rlang
Rtsne
Seurat
SeuratObject
tidytable
uwot ≥ 0.1.14

Suggests

dplyr
knitr
rmarkdown
testthat ≥ 3.0.0
patchwork

LinkingTo

Rcpp ≥ 1.0.8