CRAN/E | batchtma

batchtma

Batch Effect Adjustments

Installation

About

Different adjustment methods for batch effects in biomarker data, such as from tissue microarrays. Some methods attempt to retain differences between batches that may be due to between-batch differences in "biological" factors that influence biomarker values.

stopsack.github.io/batchtma/
github.com/stopsack/batchtma

Key Metrics

Version 0.1.6
Published 2021-12-06 871 days ago
Needs compilation? no
License GPL-3
CRAN checks batchtma results

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Maintainer

Maintainer

Konrad Stopsack

stopsack@post.harvard.edu

Authors

Konrad Stopsack

aut / cre

Travis Gerke

aut

Material

Reference manual
Package source

Vignettes

Get Started: Methods to address batch effects

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Imports

broom ≥ 0.7.0
dplyr ≥ 1.0.0
geepack
ggplot2
limma
nnet
purrr ≥ 0.3.0
quantreg
rlang ≥ 0.4.0
stringr
tibble
tidyr ≥ 1.1.0
magrittr

Suggests

knitr
rmarkdown
tidyverse