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aroma.cn

Copy-Number Analysis of Large Microarray Data Sets

Installation

About

Methods for analyzing DNA copy-number data. Specifically, this package implements the multi-source copy-number normalization (MSCN) method for normalizing copy-number data obtained on various platforms and technologies. It also implements the TumorBoost method for normalizing paired tumor-normal SNP data.

Citation aroma.cn citation info
www.aroma-project.org/
github.com/HenrikBengtsson/aroma.cn
Bug report File report

Key Metrics

Version 1.7.1
R ≥ 3.1.2
Published 2024-02-17 41 days ago
Needs compilation? no
License LGPL-2.1
License LGPL-3
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Maintainer

Maintainer

Henrik Bengtsson

henrikb@braju.com

Authors

Henrik Bengtsson

aut / cre / cph

Pierre Neuvial

aut

Material

NEWS
Reference manual
Package source

In Views

Omics

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

aroma.cn archive

Depends

R ≥ 3.1.2
R.utils ≥ 2.11.0
aroma.core ≥ 3.2.2

Imports

R.methodsS3 ≥ 1.8.1
R.oo ≥ 1.24.0
R.filesets ≥2.14.0
R.cache ≥ 0.15.0
matrixStats ≥ 0.61.0
PSCBS ≥ 0.65.0
future.apply

Suggests

aroma.light ≥ 2.2.1
DNAcopy ≥ 1.40.0
GLAD ≥ 1.12.0