CRAN/E | aroma.affymetrix

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

Installation

About

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.

Citation aroma.affymetrix citation info
www.aroma-project.org/
github.com/HenrikBengtsson/aroma.affymetrix
Bug report File report

Key Metrics

Version 3.2.2
R ≥ 3.2.0
Published 2024-02-18 61 days ago
Needs compilation? no
License LGPL-2.1
License LGPL-3
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Downloads

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Last 365 days 9.348 -5%

Maintainer

Maintainer

Henrik Bengtsson

henrikb@braju.com

Authors

Henrik Bengtsson

aut / cre / cph

James Bullard

ctb

Kasper Hansen

ctb

Pierre Neuvial

ctb

Elizabeth Purdom

ctb

Mark Robinson

ctb

Ken Simpson

ctb

Material

NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

aroma.affymetrix archive

Depends

R ≥ 3.2.0
R.utils ≥ 2.9.0
aroma.core ≥ 3.2.0

Imports

methods
R.methodsS3 ≥ 1.7.1
R.oo ≥ 1.23.0
R.cache ≥0.14.0
R.devices ≥ 2.16.1
R.filesets ≥ 2.13.0
aroma.apd ≥ 0.6.0
MASS
splines
matrixStats ≥ 0.55.0
listenv
future

Suggests

DBI ≥ 1.0.0
gsmoothr ≥ 0.1.7
RColorBrewer ≥ 1.1-2
Biobase ≥ 2.28.0
BiocGenerics ≥ 0.14.0
affxparser ≥1.40.0
affy ≥ 1.46.0
affyPLM ≥ 1.44.0
aroma.light ≥2.4.0
gcrma ≥ 2.40.0
limma ≥ 3.24.1
oligo ≥1.32.0
oligoClasses ≥ 1.30.0
pdInfoBuilder ≥ 1.32.0
preprocessCore ≥ 1.28.0
AffymetrixDataTestFiles
dChipIO ≥ 0.1.1

Reverse Depends

ACNE
TIN

Reverse Imports

PECA