CRAN/E | agvgd

agvgd

An R Implementation of the 'Align-GVGD' Method

Installation

About

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments doi:10.1136/jmg.2005.033878. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on .

maialab.org/agvgd/
github.com/maialab/agvgd
Bug report File report

Key Metrics

Version 0.1.2
R ≥ 2.10
Published 2022-09-10 587 days ago
Needs compilation? no
License MIT
License File
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Maintainer

Maintainer

Ramiro Magno

ramiro.magno@gmail.com

Authors

Ramiro Magno

aut / cre

Isabel Duarte

aut

Ana-Teresa Maia

aut

CINTESIS

cph / fnd

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

agvgd archive

Depends

R ≥ 2.10

Imports

crayon
dplyr
glue
grantham
magrittr
purrr
rlang
seqinr
stringr
tibble
tidyr
vctrs

Suggests

rmarkdown
covr
testthat ≥ 3.0.0