CRAN/E | adnuts

adnuts

No-U-Turn MCMC Sampling for 'ADMB' Models

Installation

About

Bayesian inference using the no-U-turn (NUTS) algorithm by Hoffman and Gelman (2014) . Designed for 'AD Model Builder' ('ADMB') models, or when R functions for log-density and log-density gradient are available, such as 'Template Model Builder' models and other special cases. Functionality is similar to 'Stan', and the 'rstan' and 'shinystan' packages are used for diagnostics and inference.

Citation adnuts citation info
github.com/Cole-Monnahan-NOAA/adnuts
Bug report File report

Key Metrics

Version 1.1.2
R ≥ 3.6.0
Published 2021-03-02 1150 days ago
Needs compilation? no
License GPL-3
License File
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Maintainer

Maintainer

Cole Monnahan

monnahc@uw.edu

Authors

Cole Monnahan

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

No-U-turn sampling for ADMB models

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

adnuts archive

Depends

R ≥ 3.6.0
snowfall ≥ 1.84.6.1

Imports

ellipse
rstan
R2admb
ggplot2
rlang

Suggests

shinystan ≥ 2.5.0
matrixcalc ≥ 1.0.3
stats
knitr
TMB
rmarkdown
withr
testthat ≥ 2.1.0