CRAN/E | admixr

admixr

An Interface for Running 'ADMIXTOOLS' Analyses

Installation

About

An interface for performing all stages of 'ADMIXTOOLS' analyses () entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.

github.com/bodkan/admixr
System requirements ADMIXTOOLS suite of command-line utilities for population genetics. See <https://reich.hms.harvard.edu/software> for the most recent installation instructions and further information.
Bug report File report

Key Metrics

Version 0.9.1
R ≥ 3.6.0
Published 2020-07-03 1365 days ago
Needs compilation? no
License MIT
License File
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Maintainer

Maintainer

Martin Petr

contact@bodkan.net

Authors

Martin Petr

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Fitting qpAdm models with a 'rotation' strategy
Tutorial and basic overview of the admixr R package

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.6.0

Imports

dplyr
magrittr
readr
stringr
tibble
stats
rlang
utils

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