CRAN/E | admix

admix

Package Admix for Admixture (aka Contamination) Models

Installation

About

Implements techniques to estimate the unknown quantities related to two-component admixture models, where the two components can belong to any distribution (note that in the case of multinomial mixtures, the two components must belong to the same family). Estimation methods depend on the assumptions made on the unknown component density (see Bordes and Vandekerkhove (2010) doi:10.3103/S1066530710010023; Patra and Sen (2016) doi:10.1111/rssb.12148); Milhaud, Pommeret, Salhi and Vandekerkhove (2022) doi:10.1016/j.jspi.2021.05.010). In practice, one can estimate both the mixture weight and the unknown component density in a wide variety of frameworks. On top of that, hypothesis tests can be performed in one and two-sample contexts to test the unknown component density (see Milhaud, Pommeret, Salhi, Vandekerkhove (2023)). Finally, clustering of unknown mixture components is also feasible in a K-samples setting.

github.com/XavierMilhaud/admix
Bug report File report

Key Metrics

Version 2.1-3
R ≥ 2.10
Published 2024-04-25 1 day ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks admix results
Language en-US

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Maintainer

Maintainer

Xavier Milhaud

xavier.milhaud.research@gmail.com

Authors

Xavier Milhaud

aut / cre

Pierre Vandekerkhove

ctb

Denys Pommeret

ctb

Yahia Salhi

ctb

Material

README
Reference manual
Package source

Vignettes

Clustering of unknown subpopulations in admixture models
Estimation of unknown elements in admixture models
Hypothesis test in admixture models

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

admix archive

Depends

R ≥ 2.10

Imports

base
cubature
fdrtool
graphics
Iso
MASS
methods
orthopolynom
pracma
Rcpp
stats
utils

Suggests

rmutil
doParallel
foreach
evd
logitnorm
flexsurv
plyr
reshape2
gridExtra
lattice
testthat ≥ 3.0.0
knitr
rmarkdown
markdown
spelling

LinkingTo

Rcpp