CRAN/E | WebGestaltR

WebGestaltR

Gene Set Analysis Toolkit WebGestaltR

Installation

About

The web version WebGestalt supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

github.com/bzhanglab/WebGestaltR

Key Metrics

Version 0.4.6
R ≥ 3.3
Published 2023-06-01 334 days ago
Needs compilation? yes
License LGPL-2
License LGPL-2.1
License LGPL-3
CRAN checks WebGestaltR results

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Maintainer

Maintainer

Yuxing Liao

yuxingliao@gmail.com

Authors

Jing Wang

aut

Yuxing Liao

aut / cre

Eric Jaehnig

ctb

Zhiao Shi

ctb

Quanhu Sheng

ctb

Material

README
NEWS
Reference manual
Package source

In Views

Omics

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

WebGestaltR archive

Depends

R ≥ 3.3

Imports

methods
dplyr
doRNG
readr
parallel ≥ 3.3.2
doParallel ≥ 1.0.10
foreach ≥ 1.4.0
jsonlite
httr
rlang
svglite
igraph
whisker
apcluster
Rcpp

LinkingTo

Rcpp