CRAN/E | VAM

VAM

Variance-Adjusted Mahalanobis

Installation

About

Contains logic for cell-specific gene set scoring of single cell RNA sequencing data.

Copyright Dartmouth College

Key Metrics

Version 1.1.0
R ≥ 3.6.0
Published 2023-11-05 173 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks VAM results

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Maintainer

Maintainer

H. Robert Frost

rob.frost@dartmouth.edu

Authors

H. Robert Frost

Material

NEWS
Reference manual
Package source

In Views

Omics

Vignettes

10x PBMC 3k log normalization Hallmark collection example
10x PBMC 3k log normalization example
10x PBMC 3k SCTransform example
Seurat pbmc_small log normalization example
Seurat pbmc_small SCTransform example

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

VAM archive

Depends

R ≥ 3.6.0
MASS
Matrix

Imports

methods ≥ 3.6.0

Suggests

Seurat ≥ 4.0.0
SeuratObject ≥ 4.0.0
sctransform ≥0.3.2

Reverse Imports

CAMML
scaper
singleCellTK
STREAK