CRAN/E | UCSCXenaTools

UCSCXenaTools

Download and Explore Datasets from UCSC Xena Data Hubs

Installation

About

Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.

Citation UCSCXenaTools citation info
docs.ropensci.org/UCSCXenaTools/
github.com/ropensci/UCSCXenaTools
Bug report File report

Key Metrics

Version 1.4.8
R ≥ 3.5
Published 2022-06-20 286 days ago
Needs compilation? no
License GPL-3
CRAN checks UCSCXenaTools results

Downloads

Last 24 hours 0 -100%
Last 7 days 205 -15%
Last 30 days 956 +17%
Last 90 days 2.369 +18%
Last 365 days 10.007 -15%

Maintainer

Maintainer

Shixiang Wang

w_shixiang@163.com

Authors

Shixiang Wang

aut / cre

Xue-Song Liu

aut

Martin Morgan

ctb

Christine Stawitz

rev

(Christine reviewed the package for ropensci, see <https://github.com/ropensci/software-review/issues/315>)

Carl Ganz

rev

(Carl reviewed the package for ropensci, see <https://github.com/ropensci/software-review/issues/315>)

Material

README
NEWS
Reference manual
Package source

Vignettes

Basic usage

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

UCSCXenaTools archive

Depends

R ≥ 3.5

Imports

digest
dplyr
httr
jsonlite
magrittr
methods
readr
rlang
utils

Suggests

covr
DT
knitr
prettydoc
rmarkdown
shiny
shinydashboard
testthat ≥ 2.1.0

Reverse Imports

UCSCXenaShiny

Reverse Suggests

sigminer