CRAN/E | UCSCXenaShiny

UCSCXenaShiny

Interactive Analysis of UCSC Xena Data

Installation

About

Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.

github.com/openbiox/UCSCXenaShiny
openbiox.github.io/UCSCXenaShiny/
Bug report File report

Key Metrics

Version 2.0.0
R ≥ 3.5
Published 2024-03-14 14 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks UCSCXenaShiny results

Downloads

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Maintainer

Maintainer

Shixiang Wang

w_shixiang@163.com

Authors

Shixiang Wang

aut / cre

Shensuo Li

aut

Yi Xiong

aut

Longfei Zhao

aut

Kai Gu

aut

Yin Li

aut

Fei Zhao

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Accessible Functions

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

UCSCXenaShiny archive

Depends

R ≥ 3.5

Imports

digest
dplyr ≥ 0.8.3
ezcox
forcats
ggplot2 ≥ 3.2.0
ggpubr ≥ 0.2
httr
magrittr ≥ 1.5
ppcor
psych
purrr
shiny ≥ 1.3.2
stats
stringr
tibble ≥ 2.1.3
tidyr
UCSCXenaTools
utils

Suggests

covr ≥ 3.2.1
cowplot
DT ≥ 0.5
furrr
future
ggrepel
ggstatsplot
knitr
pacman
plotly
plyr
RColorBrewer ≥ 1.1.2
rmarkdown
Rtsne
scales
survival
survminer
testthat ≥ 2.0.1
umap