CRAN/E | TcGSA

TcGSA

Time-Course Gene Set Analysis

Installation

About

Implementation of Time-course Gene Set Analysis (TcGSA), a method for analyzing longitudinal gene-expression data at the gene set level. Method is detailed in: Hejblum, Skinner & Thiebaut (2015) doi:10.1371/journal.pcbi.1004310.

Citation TcGSA citation info
sistm.github.io/TcGSA/
Bug report File report

Key Metrics

Version 0.12.10
R ≥ 3.0.2
Published 2022-02-28 790 days ago
Needs compilation? no
License GPL-2
License File
CRAN checks TcGSA results

Downloads

Yesterday 14 0%
Last 7 days 62 -27%
Last 30 days 258 -11%
Last 90 days 825 -15%
Last 365 days 3.329 -12%

Maintainer

Maintainer

Boris P Hejblum

boris.hejblum@u-bordeaux.fr

Authors

Boris P Hejblum

aut / cre

Damien Chimits

aut

Anthony Devaux

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

TcGSA_userguide

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

TcGSA archive

Depends

R ≥ 3.0.2
ggplot2 ≥ 2.0.0

Imports

lme4 ≥ 1.0-4
reshape2
GSA
multtest
cluster
cowplot
graphics
grDevices
gtools
stringr
splines
stats
utils

Suggests

BiocManager
foreach
parallel
doParallel
dearseq
knitr
GEOquery
rmarkdown