CRAN/E | TaxaNorm

TaxaNorm

Feature-Wise Normalization for Microbiome Sequencing Data

Installation

About

A novel feature-wise normalization method based on a zero-inflated negative binomial model. This method assumes that the effects of sequencing depth vary for each taxon on their mean and also incorporates a rational link of zero probability and taxon dispersion as a function of sequencing depth. Ziyue Wang, Dillon Lloyd, Shanshan Zhao, Alison Motsinger-Reif (2023) doi:10.1101/2023.10.31.563648.

github.com/wangziyue57/TaxaNorm
Bug report File report

Key Metrics

Version 2.4
R ≥ 4.0.0
Published 2023-12-12 144 days ago
Needs compilation? no
License GPL-3
CRAN checks TaxaNorm results

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Maintainer

Maintainer

Dillon Lloyd

dtlloyd@ncsu.edu

Authors

Ziyue Wang

aut

Dillon Lloyd

aut / cre / cph

Shanshan Zhao

aut / ctb

Alison Motsinger-Reif

aut / ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

TaxNorm Introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 4.0.0
microbiome

Imports

phyloseq
stats
S4Vectors
BiocGenerics
vegan
methods
MASS
future
future.apply
matrixStats
pscl
parallelly
ggplot2
utils

Suggests

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