CRAN/E | TFMPvalue

TFMPvalue

Efficient and Accurate P-Value Computation for Position Weight Matrices

Installation

About

In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. doi:10.1186/1748-7188-2-15.

github.com/ge11232002/TFMPvalue
Copyright 2007 LIFL-USTL-INRIA
System requirements C++11
Bug report File report

Key Metrics

Version 0.0.9
R ≥ 3.0.1
Published 2022-10-21 157 days ago
Needs compilation? yes
License GPL-2
CRAN checks TFMPvalue results

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Maintainer

Maintainer

Ge Tan

ge_tan@live.com

Authors

Ge Tan

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

TFMPvalue archive

Depends

R ≥ 3.0.1

Imports

Rcpp ≥ 0.11.1

Suggests

testthat

LinkingTo

Rcpp

Reverse Imports

motifbreakR
TFBSTools
transite