CRAN/E | TDCor

TDCor

Gene Network Inference from Time-Series Transcriptomic Data

Installation

About

The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.

Key Metrics

Version 0.1-2
R ≥ 3.1.2
Published 2015-10-26 3077 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks TDCor results

Downloads

Yesterday 9 0%
Last 7 days 22 -41%
Last 30 days 119 -8%
Last 90 days 544 +53%
Last 365 days 1.696 -33%

Maintainer

Maintainer

Mikael Lucas

mikael.lucas@ird.fr

Authors

Julien Lavenus

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

TDCor archive

Depends

R ≥ 3.1.2
deSolve

Imports

parallel