CRAN/E | TBRDist

TBRDist

Rearrangement Distances Between Unrooted Phylogenetic Trees

Installation

About

Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) .

Citation TBRDist citation info
ms609.github.io/TBRDist/
github.com/ms609/TBRDist/
github.com/cwhidden/uspr/
Copyright Underlying C++ code copyright 2018 Chris Whidden.
System requirements C++11
Bug report File report

Key Metrics

Version 1.0.2
R ≥ 3.4.0
Published 2020-09-17 927 days ago
Needs compilation? yes
License GPL (≥ 3)
CRAN checks TBRDist results
Language en-GB

Downloads

Last 24 hours 0 -100%
Last 7 days 57 -39%
Last 30 days 231 -4%
Last 90 days 676 +4%
Last 365 days 2.839 -39%

Maintainer

Maintainer

Martin R. Smith

martin.smith@durham.ac.uk

Authors

Martin R. Smith

aut / cre / cph

Chris Whidden

cph

Material

NEWS
Reference manual
Package source

Vignettes

Using TBRDist

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

TBRDist archive

Depends

R ≥ 3.4.0

Imports

ape
Rdpack
TreeDist
TreeTools ≥ 1.1.0

Suggests

knitr
rmarkdown
testthat

LinkingTo

BH
Rcpp