CRAN/E | SubVis

SubVis

Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices

Installation

About

Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.

Key Metrics

Version 2.0.2
R ≥ 3.3.0
Published 2017-05-23 2382 days ago
Needs compilation? no
License GPL-3
CRAN checks SubVis results

Downloads

Last 24 hours 0 -100%
Last 7 days 27 -44%
Last 30 days 184 +30%
Last 90 days 449 +1%
Last 365 days 1.995 -38%

Maintainer

Maintainer

Scott Barlowe

sabarlowe@email.wcu.edu

Authors

Scott Barlowe

Material

Reference manual
Package source

Vignettes

SubVis

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SubVis archive

Depends

R ≥ 3.3.0
shiny
Biostrings

Suggests

knitr
rmarkdown