CRAN/E | SoupX

SoupX

Single Cell mRNA Soup eXterminator

Installation

About

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) doi:10.1101/303727.

Citation SoupX citation info
github.com/constantAmateur/SoupX

Key Metrics

Version 1.6.2
R ≥ 3.5.0
Published 2022-11-01 513 days ago
Needs compilation? no
License GPL-2
CRAN checks SoupX results

Downloads

Yesterday 57 0%
Last 7 days 236 -22%
Last 30 days 1.192 -15%
Last 90 days 4.054 +6%
Last 365 days 15.046 +25%

Maintainer

Maintainer

Matthew Daniel Young

my4@sanger.ac.uk

Authors

Matthew Daniel Young

Material

README
Reference manual
Package source

Vignettes

PBMC Demonstration

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SoupX archive

Depends

R ≥ 3.5.0

Imports

ggplot2
Matrix
methods
Seurat ≥ 3.2.2

Suggests

knitr
rstan
DropletUtils
rmarkdown
formatR

Reverse Imports

singleCellTK